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2D Structure
Also known as: 2'-deoxycytidine, 951-77-9, Cytidine, 2'-deoxy-, Dcyd, Deoxyribose cytidine, Cytosine deoxyriboside
Molecular Formula
C9H13N3O4
Molecular Weight
227.22  g/mol
InChI Key
CKTSBUTUHBMZGZ-SHYZEUOFSA-N
FDA UNII
0W860991D6

A nucleoside component of DNA composed of CYTOSINE and DEOXYRIBOSE.
1 2D Structure

2D Structure

2 Identification
2.1 Computed Descriptors
2.1.1 IUPAC Name
4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
2.1.2 InChI
InChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1
2.1.3 InChI Key
CKTSBUTUHBMZGZ-SHYZEUOFSA-N
2.2 Other Identifiers
2.2.1 UNII
0W860991D6
2.3 Synonyms
2.3.1 MeSH Synonyms

1. Cytosine Deoxyribonucleoside

2. Cytosine Deoxyriboside

2.3.2 Depositor-Supplied Synonyms

1. 2'-deoxycytidine

2. 951-77-9

3. Cytidine, 2'-deoxy-

4. Dcyd

5. Deoxyribose Cytidine

6. Cytosine Deoxyriboside

7. Desoxycytidin

8. Doxecitine

9. Cytosine, Deoxyribonucleoside

10. 4-amino-1-[(2r,4s,5r)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one

11. 0w860991d6

12. Chebi:15698

13. Dtxsid70883620

14. Mt-1621 Component 2'-deoxycytidine

15. 4-amino-1-[(2r,4s,5r)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one

16. 4-amino-1-((2r,4s,5r)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl)-1,2-dihydropyrimidin-2-one

17. 4-amino-1-((2r,4s,5r)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl)pyrimidin-2-one

18. Deoxyriboside, Cytosine

19. Refchem:585745

20. Deoxyribonucleoside, Cytosine

21. Dtxcid901023131

22. 213-454-1

23. 4-amino-1-((2r,4s,5r)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidin-2(1h)-one

24. 207121-53-7

25. 2-deoxycytidine

26. Mfcd00006547

27. Desoxycytidin [german]

28. D-cytidine

29. 1beta-2'-deoxyribofuranosylcytosine, D-

30. 1-(2-deoxy-beta-d-ribofuranosyl)cytosine

31. 56905-41-0

32. Dc

33. Desoxycytidine

34. Deoxycytidine;cytosine Deoxyriboside;deoxyribose Cytidine

35. 4-amino-1-(2-deoxy-beta-d-erythro-pentofuranosyl)-2(1h)-pyrimidinone

36. 2(1h)-pyrimidinone, 4-amino-1-(2-deoxy-beta-d-erythro-pentofuranosyl)-

37. 2'-deoxy-cytidine

38. Einecs 213-454-1

39. Brn 0087567

40. 2 Inverted Exclamation Marka-deoxycytidine

41. Deoxy-cytidine

42. 2' Deoxycytidine

43. 2-deoxy-cytidine

44. Unii-0w860991d6

45. 4-amino-1-[(2r,4s,5r)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2(1h)-one

46. 2a(2)-deoxycytidine

47. 2'-deoxy-d-cytidine

48. 2 Inverted Exclamation Mark -deoxycytidine

49. Cytidine, 2'-deoxy-, Labeled With Tritium

50. Doxecitine [inn]

51. Doxecitine (usan/inn)

52. Doxecitine [usan]

53. 2'-deoxycytidine(2'-dc)

54. Schembl23178

55. 4-25-00-03662 (beilstein Handbook Reference)

56. 2'-dc

57. Chembl66115

58. Orb1302587

59. Orb3026064

60. Schembl3693586

61. Schembl28042927

62. Msk6803

63. Mt1621 (dc)

64. Kygevvi Component Doxecitine

65. Hy-d0184

66. Bdbm50367094

67. Ebc-48109

68. Hg1097

69. 2'-deoxycytidine, >=99% (hplc)

70. Akos015896791

71. Msk6803-1000w

72. Ac-8210

73. Db02594

74. Nd06286

75. 1-(2-deoxy-b-d-ribofuranosyl)cytosine

76. 4-amino-1-[(2r,4s,5r)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2-one

77. Ncgc00142493-01

78. As-14313

79. Bp-58643

80. Sy066621

81. 1-(2-deoxy-.beta.-d-ribofuranosyl)cytosine

82. Cs-0010105

83. D3583

84. Ns00120718

85. 1-(2-deoxy-beta-delta-ribofuranosyl)cytosine

86. C00881

87. D12465

88. 2'-deoxycytidine Solution In Water, 1000ug/ml

89. En300-6477283

90. F211296

91. Q422504

92. 1-(2-deoxy-beta-d-erythro-pentofuranosyl)-cytosine

93. Brd-k91822704-001-01-9

94. Brd-k91822704-003-07-2

95. 1-(2-deoxy-beta-delta-erythro-pentofuranosyl)-cytosine

96. Z3072884208

97. 4-amino-1-(2-deoxy-b-d-erythro-pentofuranosyl)-2(1h)-pyrimidinone

98. 1-(2-deoxy-?-d-erythro-pentofuranosyl)-4-imino-1,4-dihydro-2-pyrimidinol

99. 4-amino-1-(2-deoxy-.beta.-d-erythro-pentofuranosyl)-2(1h)-pyrimidinone

100. 4-amino-1-(2-deoxy-beta-delta-erythro-pentofuranosyl)-2(1h)-pyrimidinone

101. 1-((2r,4s,5r)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-4-imino-1,4-dihydropyrimidin-2-ol

2.4 Create Date
2005-06-01
3 Chemical and Physical Properties
Molecular Weight 227.22 g/mol
Molecular Formula C9H13N3O4
XLogP3-1.8
Hydrogen Bond Donor Count3
Hydrogen Bond Acceptor Count4
Rotatable Bond Count2
Exact Mass Da
Monoisotopic Mass Da
Topological Polar Surface Area108
Heavy Atom Count16
Formal Charge0
Complexity355
Isotope Atom Count0
Defined Atom Stereocenter Count3
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently Bonded Unit Count1
4 Drug and Medication Information
4.1 Drug Indication

In combination with [thymidine], doxecitine is indicated for the treatment of thymidine kinase 2 deficiency (TK2d) in adults and pediatric patients with an age of symptom onset on or before 12 years.


5 Pharmacology and Biochemistry
5.1 Absorption, Distribution and Excretion

Absorption

Doxecitine is administered orally, with rapid absorption and plasma concentrations returning to near baseline within 8 to 12 hours. The absolute bioavailability of doxecitine following oral administration has not been determined. The median time to peak plasma concentration (Tmax) was approximately two hours for doxecitine.


Route of Elimination

Urinary excretion of intact doxecitine and doxribtimine was <1% of the dose in healthy subjects following an oral administration of doxecitine and doxribtimine.


5.2 Metabolism/Metabolites

Doxecitine is primarily degraded by cytidine deaminase to its nucleobases and the 2-deoxy--D-ribose 1-phosphate moiety. Intermediate products of doxecitine catabolism are deoxyuridine, uracil, and dihydrouracil with the end products -alanine, ammonia, and carbon dioxide (CO2).


5.3 Biological Half-Life

The mean half-life was approximately 1 hour for doxecitine following a single oral administration of 133 mg/kg doxecitine under fed conditions in healthy adult subjects.


5.4 Mechanism of Action

The progressive, often fatal myopathy seen in Thymidine Kinase 2 deficiency (TK2d) is caused by mutations in the nuclear TK2 gene, leading to a dysfunctional or deficient mitochondrial TK2 enzyme. This enzyme is essential for phosphorylating the pyrimidine nucleosides doxecitine (dC) and thymidine (dT) into dCMP and dTMP, which are precursors for the deoxyribonucleotide triphosphates (dNTPs) required for mitochondrial DNA (mtDNA) maintenance and replication. The resulting metabolic block causes severe mtDNA depletion and dysfunction of the mitochondrial respiratory chain.[] Doxecitine, in combination with doxribtimine, functions as a nucleoside substrate enhancement therapy that successfully bypasses the defective mitochondrial pathway. The high concentrations of exogenous dC and dT are primarily phosphorylated by intact cytosolic salvage enzymes, specifically Deoxycytidine Kinase (dCK) and Thymidine Kinase 1 (TK1). The nucleosides are actively transported into cells and across the blood-brain barrier via equilibrative nucleoside transporters. The resulting phosphorylated dNTP precursors are then made available to the mitochondria. This replenishes the critically depleted dNTP pools, which facilitates the replication of mtDNA by the mitochondrial DNA Polymerase gamma.