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Technical details about PAT-1251, learn more about the structure, uses, toxicity, action, side effects and more

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2D Structure
1. Also known as: Pat-1251, 2007885-39-2, Y3hmf6g24b, [3-[4-(aminomethyl)-6-(trifluoromethyl)pyridin-2-yl]oxyphenyl]-[(3r,4r)-3-fluoro-4-hydroxypyrrolidin-1-yl]methanone, (3-((4-(aminomethyl)-6-(trifluoromethyl)-2-pyridinyl)oxy)phenyl)((3r,4r)-3-fluoro-4-hydroxy-1-pyrrolidinyl)methanone, 2098884-52-5
Molecular Formula
C18H17F4N3O3
Molecular Weight
399.3  g/mol
InChI Key
ODGXXYXJORZPHE-ZIAGYGMSSA-N
FDA UNII
Y3HMF6G24B

LOXL2 Inhibitor GB2064 is an orally available, small-molecule, irreversible inhibitor of lysyl oxidase homolog 2 (lysyl oxidase-like protein 2; LOXL2) with potential antifibrotic activity. Upon oral administration, the aminomethyl pyridine moiety of LOXL2 inhibitor GB2064 interacts with the active site of LOXL2 to form a pseudo-irreversible inhibitory complex, thereby inhibiting the catalytic activity of LOXL2. LOXL2, a secreted glycoprotein, catalyzes the post-translational oxidative deamination of lysine residues on target proteins, including collagen and elastin, leading to the formation of deaminated lysine (allysine). Condensation with other allysines or lysines drives the formation of inter- and intramolecular cross-linkages that impact remodeling of the extracellular matrix (ECM), potentially leading to fibrosis. Inhibition of LOXL2, which is often upregulated in fibrotic tissue, may reduce fibrosis in certain chronic fibrotic diseases.
1 2D Structure

2D Structure

2 Identification
2.1 Computed Descriptors
2.1.1 IUPAC Name
[3-[4-(aminomethyl)-6-(trifluoromethyl)pyridin-2-yl]oxyphenyl]-[(3R,4R)-3-fluoro-4-hydroxypyrrolidin-1-yl]methanone
2.1.2 InChI
InChI=1S/C18H17F4N3O3/c19-13-8-25(9-14(13)26)17(27)11-2-1-3-12(6-11)28-16-5-10(7-23)4-15(24-16)18(20,21)22/h1-6,13-14,26H,7-9,23H2/t13-,14-/m1/s1
2.1.3 InChI Key
ODGXXYXJORZPHE-ZIAGYGMSSA-N
2.1.4 Canonical SMILES
C1C(C(CN1C(=O)C2=CC(=CC=C2)OC3=CC(=CC(=N3)C(F)(F)F)CN)F)O
2.1.5 Isomeric SMILES
C1[C@H]([C@@H](CN1C(=O)C2=CC(=CC=C2)OC3=CC(=CC(=N3)C(F)(F)F)CN)F)O
2.2 Other Identifiers
2.2.1 UNII
Y3HMF6G24B
2.3 Synonyms
2.3.1 Depositor-Supplied Synonyms

1. Pat-1251

2. 2007885-39-2

3. Y3hmf6g24b

4. [3-[4-(aminomethyl)-6-(trifluoromethyl)pyridin-2-yl]oxyphenyl]-[(3r,4r)-3-fluoro-4-hydroxypyrrolidin-1-yl]methanone

5. (3-((4-(aminomethyl)-6-(trifluoromethyl)-2-pyridinyl)oxy)phenyl)((3r,4r)-3-fluoro-4-hydroxy-1-pyrrolidinyl)methanone

6. 2098884-52-5

7. Methanone, (3-((4-(aminomethyl)-6-(trifluoromethyl)-2-pyridinyl)oxy)phenyl)((3r,4r)-3-fluoro-4-hydroxy-1-pyrrolidinyl)-

8. Chembl4116649

9. Schembl18072268

10. Us10774069, Compound 1

11. Bdbm461421

12. Ex-a2634

13. Hy-107422

14. Cs-0028450

15. J3.653.610a

16. [3-[[4-(aminomethyl)-6-(trifluoromethyl)-2-pyridyl]oxy]phenyl][(3r,4r)-3-fluoro-4-hydroxy-1-pyrrolidinyl]methanone

17. Rel-(3-((4-(aminomethyl)-6-(trifluoromethyl)pyridin-2-yl)oxy)phenyl)((3r,4r)-3-fluoro-4-hydroxypyrrolidin-1-yl)methanone

2.4 Create Date
2016-12-08
3 Chemical and Physical Properties
Molecular Weight 399.3 g/mol
Molecular Formula C18H17F4N3O3
XLogP31.5
Hydrogen Bond Donor Count2
Hydrogen Bond Acceptor Count9
Rotatable Bond Count4
Exact Mass399.12060406 g/mol
Monoisotopic Mass399.12060406 g/mol
Topological Polar Surface Area88.7 Ų
Heavy Atom Count28
Formal Charge0
Complexity551
Isotope Atom Count0
Defined Atom Stereocenter Count2
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently Bonded Unit Count1
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